2016, Number 2
<< Back Next >>
TIP Rev Esp Cienc Quim Biol 2016; 19 (2)
Species diversity and plastid DNA haplotype distributions of Pinus subsection Australes (Pinaceae) in Guerrero and Oaxaca
Ortiz-Martínez A, Gernandt DS
Language: English
References: 43
Page: 92-101
PDF size: 1512.12 Kb.
ABSTRACT
Pinus subsection
Australes is a group of North American hard pines comprising approximately 29 ecologically and economically important tree species distributed throughout North and Central America and the Caribbean Islands. Previous studies have shown that some species of this subsection share plastid DNA haplotypes, a pattern that is attributed to introgressive hybridization or the retention of ancestral polymorphisms. Here we describe the morphological and plastid haplotype diversity for this group of species in the states of Guerrero and Oaxaca, Mexico. Seven species of
Pinus subsection
Australes are recognized in the study area, one of which,
P. patula, includes two varieties. Seven variable sites and nine haplotypes were found in an 840 b.p. fragment of the DNA coding region
ycf1. Shared haplotypes were found for
P. patula var.
patula, P. patula var.
longipedunculata, P. herrerae, and
P. tecunumanii. Four of the nine haplotypes found were restricted to Oaxaca. Although plastid DNA genealogies are valuable for studying evolution in this group, greater sampling of individuals and the inclusion of more variable sites are needed to more accurately infer species relationships.
REFERENCES
Richardson, D.M. & Rundell, P.W. In Ecology and biogeography. Phylogeny and systematics of Pinus. (ed. Richardson, D.M.) 3-46 (Cambridge: Cambridge University Press, 1998).
Eckenwalder, J.E. Conifers of the world: the complete reference. (Timber Press, Portland, 2009).
Farjon, A. Pines: drawings and descriptions of the genus Pinus. (Brill Academic Publishers Leiden, Netherlands, 2005).
Farjon, A. A handbook of the world’s conifers. (Brill, Leiden; Boston, 2010).
Gernandt, D.S., Willyard, A., Syring, J.V. & Liston, A. The conifers (Pinophyta). In Genetics, genomics and breeding of conifers, Genetics, genomics and breeding of crop plants (Science Publishers, Enfield, New Hampshire, 2011).
Farjon, A. & Styles, B.T. Pinus (Pinaceae). Flora Neotropica monograph 75. (The New York Botanical Garden, Bronx, 1997).
Gernandt, D.S. & Pérez-de la Rosa, J.A. Biodiversidad de Pinophyta (coníferas) en México. Rev. Mex. Bio. 85, 126–133 (2013).
Gernandt, D.S., Gaeda López, G., Ortiz García, S. & Liston, A. Phylogeny and classification of Pinus. Taxon 54, 29–42 (2005).
Price, R.A., Liston, A. & Strauss, S.H. In Ecology and biogeography. Phylogeny and systematics of Pinus. (ed. Richardson, D.M.) 49–68 (Cambridge: Cambridge University Press, 1998).
Mirov, N.T. The genus Pinus. (Ronald Press Co., New York, 1967).
Shaw, G.R. The genus Pinus. (Cambridge: Riverside Press,1914).
Martínez, M. Los pinos mexicanos. 2a. Edición. (Botas, México, D. F., 1948).
Perry, J.P. The pines of Mexico and Central America. (Timber Press, Portland, 1991).
Shaw, G.R. The pines of Mexico. (Cambridge, 1909).
Little, E.L. & Critchfield, W.B. 1969. Subdivisions of the genus Pinus (pines). U.S. Forest Services, Washington.
Ledig, F.T. In Ecology & Biogeography of Pinus. Genetic variation in Pinus (ed. Richardson, D. M.) 251–280. (Cambridge University Press, Cambridge, 1998).
Delgado, P., Salas-Lizana, R., Vázquez-Lobo, A., Wegier, M. A., Álvarez-Buylla, E.R., Vendramin, G.G. & Piñero, D. Introgressive hybridization in Pinus montezumae Lamb and Pinus pseudostrobus Lindl. (Pinaceae): morphological and molecular (cpSSR) evidence. Int. J. Plant. Sci. 168(6), 861–875 (2007).
Hernández-León, S., Gernandt, D.S., Pérez de la Rosa, J.A. & Jardón-Barbolla, L. Phylogenetic relationships and species delimitation in Pinus section Trifoliae inferred from plastid DNA. PLoS One 8(7), e70501 (2013).
Hong, Y.-P., Krupkin, A.B. & Strauss, S.H. Chloroplast DNA transgresses species boundaries and evolves at variable rates in the California closed-cone pines (Pinus radiata, P. muricata, and P. attenuata). Mol. Phylogenet. Evol. 2, 322–329 (1993).
Liston, A., Parker-Defeniks, M., Syring, J.V., Willyard, A. & Cronn, R. Interspecific phylogenetic analysis enhances intraspecific phylogeographical inference: a case study in Pinus lambertiana. Mol. Ecol. 16(18), 3926–3937 (2007).
Matos, J.A. & Schaal, B.A. Chloroplast evolution in the Pinus montezumae complex: a coalescent approach to hybridization. Evolution 54(4), 1218–1233 (2000).
Moreno-Letelier, A. & Piñero, D. Phylogeographic structure of Pinus strobiformis Engelm. across the Chihuahuan Desert filter-barrier. J. Biogeogr. 36, 121–131 (2009).
Willyard, A., Cronn, R. & Liston, A. Reticulate evolution and incomplete lineage sorting among the ponderosa pines. Mol. Phylogenet. Evol. 52(2), 498–511 (2009).
Syring, J., Farrell, K., Businský, R., Cronn, R. & Liston, A. Widespread genealogical nonmonophyly in species of Pinus subgenus Strobus. Syst. Biol. 56(2), 163–181 (2007).
Mogensen, H. L. The hows and whys of cytoplasmic inheritance in seed plants. Am. J. Bot. 83(3), 383-404 (1996).
Petit, R.J., Duminil, J., Fineschi, S., Hampe, A., Salvini, D. & Vendramin, G.G. Comparative organization of chloroplast, mitochondrial and nuclear diversity in plant populations. Mol. Ecol. 14, 689-701 (2005).
Gernandt, D.S., Hernández-León, S., Salgado-Hernández, E. & Pérez de la Rosa, J.A. Phylogenetic relationships of Pinus subsection Ponderosae inferred from rapidly evolving cpDNA regions. Syst. Bot. 34, 481–491 (2009).
Instituto Nacional de Estadística y Geografía. Censo de Población y Vivienda (2010): Panorama sociodemográfico de México / Instituto de Estadística y Geografía (México). Second Edition. (Instituto Nacional de Estadística y Geografía. México, 2011).
Ferrusquía-Villafranca, I. Geology of Mexico: A synopsis. In Biological diversity of Mexico: origins and distribution. (eds. Ramamoorthy, T.P., Bye, R., Lot, A. & Fa, J. ) 3–108 (Oxford University Press, New York and Oxford, 1998).
García-Mendoza, A.J. & Meave, J.A. In Introduction. Diversidad florística de Oaxaca: de musgos a angiospermas (colecciones y lista de especies), (eds. García-Mendoza, A.J. and Meave J.A.) 13–34. (México. Instituto de Biología and Comisión Nacional para el Conocimiento y Uso de la Biodiversidad, 2011).
Fonseca, R.M. In Flora of Guerrero. Pinaceae (eds. Diego-Pérez, N. & Fonseca, R.M.) 1-64. (Prensa de Ciencias, México, D.F., 2013).
Del Castillo, R.F., Pérez de la Rosa, J.A., Vargas Amado, G. & Rivera García, R. In Biodiversidad de Oaxaca. Coníferas (eds. García-Mendoza, A., Ordóñez, M. de J. & Briones-Salas, M.) 141–158 (Instituto de Biología UNAM-Fondo Oaxaqueño para la Conservación de la Naturaleza-World Wildlife Fund, México, D.F., 2004).
R Development Core Team. R: A language and environment for statistical computing. Vienna, Austria: R Foundation for Statistical Computing. http://www.r-project.org/. (2011).
Doyle, J.J. & Doyle, J.J. A rapid DNA isolation procedure for small quantities of fresh leaf tissue. Phytochem. Bull. 19, 11–15 (1987).
Wakasugi, T., Tsudzuki, J., Ito, S., Nakashima, K., Tsudzuki, T. & Sugiura, S. Loss of all ndh genes as determined by sequencing the entire chloroplast genome of the black pine Pinus thunbergii. Proc. Nat. Acad. Sci. 91(21), 9794–9798 (1994).
Parks, M., Cronn, R., & Liston, A. Separating the wheat from the chaff: mitigating the effects of noise in a plastome phylogenomic data set from Pinus L. (Pinaceae). BMC Evol. Biol. 12, 100 (2012).
Kearse, M. et al. Geneious Basic: an integrated and extendable desktop software platform for the organization and analysis of sequence data. Bioinformatics 28(12), 1647–1649 (2012).
Hall, T.A. BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp. Ser. 41, 95–98 (1999).
Clement, M., Posada, D. & Crandall, K.A. TCS: a computer program to estimate gene genealogies. Mol. Ecol. 9, 1657–1659 (2000).
Librado, P. & Rozas, J. DnaSP v5: A software for comprehensive analysis of DNA polymorphism data. Bioinformatics 25(11), 1451–1452 (2009).
Flores-Rentería, L. et al. Genetic, morphological, geographical and ecological approaches reveal phylogenetic relationships in complex groups, an example of recently diverged pinyon pine species (Subsection Cembroides). Mol. Phylogenet. Evol. 69, 940–949 (2013).
Gernandt, D.S., Piñero, D. & Liston, A. Phylogenetics of Pinus subsections Cembroides and Nelsoniae inferred from cpDNA sequences. Syst. Bot. 28, 657–673 (2003).
Jardon-Barbolla, L., Delgado-Valerio, P., Geada-López, G., Vázquez-Lobo, A. & Piñero, D. Phylogeography of Pinus subsection Australes in the Caribbean Basin. Ann. Bot. 107, 229–241 (2010).