2005, Number 3-4
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Microbiología 2005; 47 (3-4)
Proteins with GGDEF and EAL domains: their role in bacterial metabolism
Marcela Méndez-Ortiz MM, Membrillo-Hernández J
Language: Spanish
References: 54
Page: 130-139
PDF size: 119.82 Kb.
ABSTRACT
The availability of multiple bacterial genome sequences has led to the discovery of several conserved domains of proteins. Recently, GGDEF and EAL domains have been described as domains responsible for the synthesis and degradation of c-di-GMP, a second messenger in bacteria. c-di-GMP has been involved in cellulose production and identified as a global regulator of several processes such as biofilm formation, motility and virulence, presumibly through a modification of the cell surface properties.
REFERENCES
Aldridge, P. and U. Jenal. 1999. Cell cycle-dependent degradation of a flagellar motor component requires a novel-type response regulator. Mol Microbiol 32:379-391.
Aldridge, P., R. Paul, P. Goymer, P. Rainey, and U. Jenal. 2003. Role of the GGDEF regulator PleD in polar development of Caulobacter crescentus. Mol Microbiol 47:1695-1708.
Ausmees, N., R. Mayer, H. Weinhouse, G. Volman, D. Amikam, M. Benziman, and M. Lindberg. 2001. Genetic data indicate that proteins containing the GGDEF domain possess diguanylate cyclase activity. FEMS Microbiol Lett 204:163-167.
Bobrov, A., O. Kirillina, and R. Perry. 2005. The phosphodiesterase activity of the HmsP EAL domain is required for negative regulation of biofilm. FEMS Microbiol Lett 247:123-130.
Bomchil, N., P. Watnick, and R. Kolter. 2003. Identification and characterization of a Vibrio cholerae gene, mbaA, involved in maintenance of biofilm architecture. J Bacteriol 185:1384-1390.
Chan, C., R. Paul, D. Samoray, N. Amiot, B. Giese, U. Jenal, and T. Schirmer. 2004. Structural basis of activity and allosteric control of diguanylate cyclase. Proc Natl Acad Sci USA 101:17084-17089.
D’Argenio, D., M. Calfee, P. Rainey, and E. Pesci. 2002. Autolysis and autoaggregation in Pseudomonas aeruginosa colony morphology mutants. J Bacteriol 184:6481-6489.
D’Argenio, D. and S. Miller. 2004. Cyclic di-GMP as a bacterial second messenger. Microbiology 150:2497-2502.
Drenkard, E. and F. Ausubel. 2002. Pseudomonas biofilm formation and antibiotic resistance are linked to phenotypic variation. Nature 416:740-743.
Egli, M., R. Gessner, L. Williams, G. Quigley, G. van der Marel, J. van Boom, A. Rich, and C. Frederick. 1990. Atomic-resolution structure of the cellulose synthase regulator cyclic diguanylic acid. Proc Natl Acad Sci USA 87:3235-3239.
Galperin, M. 2005. Bacterial signal transduction network in a genomic perspective. Environ Microbiol 6:552-567.
Galperin, M., T. Gaidenko, A. Mulkidjanian, M. Nakano, and C. Price. 2001. MHYT, a new integral membrane sensor domain. FEMS Microbiol Lett 205:17-23.
Galperin, M., N. Nikolskaya, and E. Koonin. 2001. Novel domains of the prokaryotic two-component signal transduction systems. FEMS Microbiol Lett 203:11-21.
García, B., C. Latasa, C. Solano, F. Garcia-del Portillo, C. Gamazo, and I. Lasa. 2004. Role of the GGDEF protein family in Salmonella cellulose biosynthesis and biofilm formation. Mol Microbiol 54:264-277.
Gilles-Gonzalez, MA. 2001. Oxygen signal transduction. IUBMB Life 51:165-173.
Haussler, S. 2004. Biofilm formation by the small colony variant phenotype of Pseudomonas aeruginosa. Environ Microbiol 6:546-551.
Hisert, K., M. Maccoss, M. Shiloh, K. Darwin, S. Singh, R. Jones, S. Ehrt, Z. Zhang, B. Gaffney, S. Gandotra, D. Holden, D. Murray, and C. Nathan. 2005. A glutamate-alanine-leucine (EAL) domain protein of Salmonella controls bacterial survival in mice, antioxidant defense and killing of macrophages: role of cyclic diGMP. Mol Microbiol 56:1234-1245.
Hoch, J. 2000. Two-component and phosphorelay signal transduction. Curr Opin Microbiol 3:165-170.
Huang, B., C. Whitchurch, and J. Mattick. 2003. FimX, a multidomain protein connecting environmental signals to twitching motility in Pseudomonas aeruginosa. J Bacteriol 185:7068-7076.
Iyer, L., V. Anantharaman, and L. Aravind. 2003. Ancient conserved domains shared by animal soluble guanylyl cyclases and bacterial signaling proteins. BMC Genomics 4:Publicación en línea.
Jacobs, C., D. Hung, and L. Shapiro. 2001. Dynamic localization of a cytoplasmic signal transduction response regulator controls morphogenesis during the Caulobacter cell cycle. Proc Natl Acad Sci USA 98:4095-4100.
Karaolis, D., M. Rashid, R. Chythanya, W. Luo, M. Hyodo, and Y. Hayakawa. 2005. c-di-GMP (3'-5'-cyclic diguanylic acid) inhibits Staphylococcus aureus cell-cell interactions and biofilm formation. Antimicrob Agents Chemother 49:1029-1038.
Kawai, R., R. Nagata, A. Hirata, and Y. Hayakawa. 2003. A new synthetic approach to cyclic bis(3'—>5')diguanylic acid. Nucleic Acids Res Suppl 3:103-104.
Kimura, S., H. Chen, I. Saxena, R. Brown Jr, and T. Itoh. 2001. Localization of c-di-GMP-binding protein with the linear terminal complexes of Acetobacter xylinum. J Bacteriol 183:5668-5674.
Kirillina, O., J. Fetherston, A. Bobrov, J. Abney, and R. Perry. 2004. HmsP, a putative phosphodiesterase, and HmsT, a putative diguanylate cyclase, control Hms-dependent biofilm formation in Yersinia pestis. Mol Microbiol 54:75-88.
Liaw, Y., Y. Gao, H. Robinson, G. Sheldrick, L. Sliedregt, G. van der Marel, J. van Boom, and A. Wang. 1990. Cyclic diguanylic acid behaves as a host molecule for planar intercalators. FEBS Lett. 264:223-227.
Magnusson, L., A. Farewell, and T. Nystrom. 2005. ppGpp: a global regulator in Escherichia coli . Trends Microbiol 13:236-242.
Merkel, T., C. Barros, and S. Stibitz. 1998. Characterization of the bvgR locus of Bordetella pertussis. J Bacteriol 180:1682-1690.
Nikolskaya, A., A. Mulkidjanian, I. Beech, and M. Galperin. 2003. MASE1 and MASE2: two novel integral membrane sensory domains. J Mol Microbiol Biotechnol 5:11-16.
Paul, R., S. Weiser, N. Amiot, C. Chan, T. Schirmer, B. Giese, and U. Jenal. 2004. Cell cycle-dependent dynamic localization of a bacterial response regulator with a novel di-guanylate cyclase output domain. Genes Dev 18:715-727.
Pei, J. and N. Grishin. 2001. GGDEF domain is homologous to adenylyl cyclase. Proteins 42:210-216.
Perry, R., A. Bobrov, O. Kirillina, H. Jones, L. Pedersen, J. Abney, and J. Fetherston. 2005. Temperature regulation of the hemin storage (Hms+) phenotype of Yersinia pestis is posttranscriptional. J Bacteriol 186:1638-1647.
Rashid, M., C. Rajanna, A. Ali, and D. Karaolis. 2003. Identification of genes involved in the switch between the smooth and rugose phenotypes of Vibrio cholerae. FEMS Microbiol Lett 227:113-119.
Romling, U., M. Rohde, A. Olsen, S. Normark, and J. Reinkoster. 2000. AgfD, the checkpoint of multicellular and aggregative behavior in Salmonella typhimurium regulates at least two independent pathways. Mol Microbiol 36:10-23.
Ross, P., Y. Aloni, H. Weinhouse, D. Michaeli, P. Weinberger-Ohana, R. Mayer, and M. Benziman. 1986. Control of cellulose synthesis in Acetobacter xylinum, a unique guanyl oligonucleotide is the immediate activator of the cellulose synthase. Carbohydr Res 49:101-117.
Ross, P., R. Mayer, and M. Benziman. 1991. Cellulose biosynthesis and function in bacteria. Microbiol Rev 55:35-58.
Ross, P., R. Mayer, H. Weinhouse, D. Amikam, Y. Huggirat, and M. Benziman. 1990. The cyclic diguanylic acid regulatory system of cellulose synthesis in Acetobacter xylinum. Chemical synthesis and biological activity of cyclic nucleotide dimer, trimer, and phosphothioate derivatives. J Biol Chem 265:18933-18943.
Ross, P., H. Weinhouse, Y. Aloni, D. Michaeli, P. Weinberger-Ohana, R. Mayer, S. Braun, E. de Vroom, G. A. van der Marel, J. van Boom, and M. Benziman. 1987. Regulation of cellulose synthesis in Acetobacter xylinum by cyclic diguanylic acid. Nature 325:279-281.
Ryjenkov, D., M. Tarutina, O. Moskvin, and M. Gomelsky. 2005. Cyclic diguanylate is a ubiquitous signaling molecule in bacteria: insights into biochemistry of the GGDEF protein domain. J Bacteriol 187:1792-1798.
Shu, C., L. Ulrich, and I. Zhulin. 2003. The NIT domain: a predicted nitrate-responsive module in bacterial sensory receptors. Trends Biochem Sci 28:121-124.
Simm, R., J. Fetherston, A. Kader, U. Romling, and R. Perry. 2005. Phenotypic Convergence Mediated by GGDEF-Domain-Containing Proteins. J Bacteriol 187:6816-6823.
Simm, R., M. Morr, A. Kader, M. Nimtz, and U. Romling. 2004. GGDEF and EAL domains inversely regulate cyclic di-GMP levels and transition from sessility to motility. Mol Microbiol 53:1123-1134.
Singh, P., A. Schaefer, M. Parsek, T. Moninger, M. Welsh, and E. Greenberg. 2000. Quorum-sensing signals indicate that cystic fibrosis lungs are infected with bacterial biofilms. Nature 407:762-764.
Solano, C., B. García, J. Valle, C. Berasain, J. Ghigo, C. Gamazo, and I. Lasa. 2002. Genetic analysis of Salmonella enteritidis biofilm formation: critical role of cellulose. Mol Microbiol 43:793-808.
Stulke, J. and W. Hillen. 1999. Carbon catabolite repression in bacteria. Curr Opin Microbiol 2:195-201.
Tal, R., H. Wong, R. Calhoon, D. Gelfand, A. Fear, G. Volman, R. Mayer, P. Ross, D. Amikam, H. Weinhouse, A. Cohen, S. Sapir, P. Ohana, and M. Benziman. 1998. Three cdg operons control cellular turnover of cyclic di-GMP in Acetobacter xylinum: genetic organization and occurrence of conserved domains in isoenzymes. J Bacteriol 180:4416-4425.
Tatusov, R., D. Natale, I. Garkavtsev, T. Tatusova, U. Shankavaram, B. Rao, B. Kiryutin, M. Galperin, N. Fedorova, and E. Koonin. 2001. The COG database: new developments in phylogenetic classification of proteins from complete genomes. Nucleic Acids Res 29:22-28.
Tischler, A. and A. Camilli. 2004. Cyclic diguanylate (c-di-GMP) regulates Vibrio cholerae biofilm formation. Mol Microbiol 53: 857-869.
Tischler, A., S. Lee, and A. Camilli. 2002. The Vibrio cholerae vieSAB locus encodes a pathway contributing to cholera toxin production. J Bacteriol 184:4104-4113.
Ulrich, L., E. Koonin, and I. Zhulin. 2005. One-component systems dominate signal transduction in prokaryotes. Trends Microbiol 13:52-56.
Weinhouse, H., S. Sapir, D. Amikam, Y. Shilo, G. Volman, P. Ohana, and M. Benziman. 1997. c-di-GMP-binding protein, a new factor regulating cellulose synthesis in Acetobacter xylinum. FEBS Lett 416:207-211.
Zhang, Z., B. Gaffney, and R. Jones. 2004. c-di-GMP displays a monovalent metal ion-dependent polymorphism . J Am Chem Soc 126:16700-16701.
Zhulin, I., A. Nikolskaya, and M. Galperin. 2003. Common extracellular sensory domains in transmembrane receptors for diverse signal transduction pathways in bacteria and archaea. J Bacteriol 185:285-294.
Zogaj, X., M. Nimtz, M. Rohde, W. Bokranz, and U. Romling. 2001. The multicellular morphotypes of Salmonella typhimurium and Escherichia coli produce cellulose as the second component of the extracellular matrix. Mol Microbiol 39:1452-1463.