2022, Number 3
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Medicina & Laboratorio 2022; 26 (3)
Characteristics of SARS-CoV-2, COVID-19, and laboratory diagnosis
Montaño-Rivera Z, Muñoz-Bravo AX, Sierra-Castrillo J, Gómez-Rave LJ
Language: Spanish
References: 66
Page: 237-259
PDF size: 469.26 Kb.
ABSTRACT
COVID‑19 is caused by the SARS-CoV-2 virus, first described in December
2019 in Wuhan, China, and declared a global pandemic in March 2020.
Currently there are various diagnostic methods for COVID-19, the gold standard
is the detection of genetic material through polymerase chain reaction (PCR) in
its variant, RT-PCR, which detects RNA-type genetic material present in the virus.
However, it is necessary to have rapid tests with high sensitivity and precision to
be performed on a large scale and provide timely diagnosis. Furthermore, other
tools must be available, and although they will not establish the diagnosis, will allow
the professional to provide better clinical and epidemiological management
that will help predict the worsening of the patient and possible admission to the
ICU. Among these, levels of D-dimer, lymphocytes, ferritin, urea and creatinine.
In this review, the usefulness and limitations of the different diagnostic methods
for COVID-19 are evaluated, as well as the characteristics, pathophysiology and
immune response to SARS-CoV-2, and some important preanalytical aspects that
allow minimizing diagnostic errors as a consequence of incorrect procedures in the
collection, transport and conservation of the sample, that allow the professional to
yield accurate and reliable results. This article was completed based on original
articles, reviews and clinical guidelines.
REFERENCES
Maguiña-Vargas C, Gastelo-Acosta R, Tequen-Bernilla A. El nuevo coronavirus y la pandemiadel COVID-19. Rev Med Hered 2020;31:125-131. https://doi.org/10.20453/rmh.v31i2.3776
Meza-Calvache JM, Estrada-Rodríguez AD,Chabusa-Martínez CB, Velasco-Paucar VA.Utilidad de pruebas de cadena de polimerasa,pruebas rápidas y tomografías en pacientes conCOVID-19. J Am Health 2020;3:32-39. https://doi.org/10.37958/jah.v3i2.28.
Salas-Asencios R, Iannacone-Oliver J, Guillén-Oneeglio A, Tantaléan-Da Fieno J, Alvariño-Flores L, Castañeda-Pérez L, et al. CoronavirusCOVID-19: Conociendo al causantede la pandemia. Biologist 2020;18. https://doi.org/10.24039/rtb2020181442.
Ramírez-Truque M, Herrera-Morice M. Rol dellaboratorio clínico ante la epidemia del COVID-19: revisión de los métodos diagnósticosdisponibles y sus limitaciones. Rev Med CosCen 2020;86:73-80.
Pastrian-Soto G. Presencia y expresión delreceptor ACE2 (target de SARS-CoV-2) en tejidoshumanos y cavidad oral. Posibles rutas deinfección en órganos orales. Int J Odontostomat2020;14:501-507. https://doi.org/10.4067/S0718-381X2020000400501.
Sanz JM, Gómez-Lahoz AM, Martín RO. Papeldel sistema inmune en la infección porel SARS-CoV-2: inmunopatología de la COVID-19. Medicine 2021;13:1917-1931. https://doi.org/10.1016/j.med.2021.05.005.
Pérez-Abeledo M, Sanz-Moreno JC. Variantesde SARS-CoV-2, una historia todavía inacabada.Vacunas 2021;22:173-179. https://doi.org/10.1016/j.vacun.2021.06.003.
Aguilar-Gómez NE, Hernández-Soto AA,Ibanes-Gutiérrez C. Características del SARSCoV-2 y sus mecanismos de transmisión. RevLatin Infect Pediatr 2020;33 143-148. https://doi.org/10.35366/95651.
Schmulson M, Dávalos MF, Berumen J. Alerta:los síntomas gastrointestinales podrían seruna manifestación de la COVID-19. Rev GastroenterolMex 2020;85:282-287. https://doi.org/10.1016/j.rgmx.2020.04.001.
Kyle MH, Hussain M, Saltz V, Mollicone I,Bence M, Dumitriu D. Vertical transmissionand neonatal outcomes following maternalSARS-CoV-2 infection during pregnancy. ClinObstet Gynecol 2022;65:195-202. https://doi.org/10.1097/grf.0000000000000667.
Poblete C, Bancalari M. Transmisión verticalde COVID-19. ¿Qué dice la evidencia?Andes Pediatr 2021;92:790-798. https://doi.org/10.32641/andespediatr.v92i5.3488.
Durán-de la Colina J, Acera-Osa A, Vecino-Cordero E. COVID-19. Su impacto en oftalmología.Gac Med Bilbao 2020;117:134-136.
Negrín-Caceres Y, Cárdenas-Monzón L, Lima-León CE. Manifestaciones oftalmológicas de laCOVID-19 y bases de su transmisión ocular. RevCubana Invest Bioméd 2021;40:e1141.
Wu P, Duan F, Luo C, Liu Q, Qu X, Liang L, etal. Characteristics of ocular findings of patientswith coronavirus disease 2019 (COVID-19) inHubei province, China. JAMA Ophthalmol2020;138:575-578. https://doi.org/10.1001/jamaophthalmol.2020.1291.
Justiz-Vaillant AA, Sabir S, Jan A. Physiology,immune response. Treasure Island (FL): Stat-Pearls Publishing; 2022. Acceso 08 de enero de2022. Disponible en https://www.ncbi.nlm.nih.gov/books/NBK539801/.
Wong LR, Perlman S. Immune dysregulationand immunopathology induced by SARS-CoV-2and related coronaviruses - are we our ownworst enemy? Nat Rev Immunol 2022;22:47-56.https://doi.org/10.1038/s41577-021-00656-2.
Rincón M, Carvallo D, Martínez E, CristanchoM. COVID-19: Fisiopatología e inmunopatología.Med Interna 2021;37:3-12.
Pourgholaminejad A, Pahlavanneshan S,Basiri M. COVID-19 immunopathology withemphasis on Th17 response and cell-based immunomodulationtherapy: Potential targets andchallenges. Scand J Immunol 2022;95:e13131.https://doi.org/10.1111/sji.13131.
López-Moreno HS. Cestodiasis tisulares: participaciónde los linfocitos T cooperadores 1 y 2.Salud Pública Méx 2002;44:145-152.
van Eijk LE, Binkhorst M, Bourgonje AR,Offringa AK, Mulder DJ, Bos EM, et al. COVID-19: immunopathology, pathophysiologicalmechanisms, and treatment options. J Pathol2021;254:307-331. https://doi.org/10.1002/path.5642.
Gustine JN, Jones D. Immunopathology ofhyperinflammation in COVID-19. Am J Pathol2021;191:4-17. https://doi.org/10.1016/j.ajpath.2020.08.009.
Parra-Izquierdo V, Florez-Sarmiento C, Romero-Sanchez MC. Inducción de “tormenta decitocinas” en pacientes infectados con SARSCoV-2 y desarrollo de COVID-19. ¿Tiene eltracto gastrointestinal alguna relación en la gravedad?Rev Colomb Gastroenterol 2020;35:21-29. https://doi.org/10.22516/25007440.539.
Huang C, Wang Y, Li X, Ren L, Zhao J, HuY, et al. Clinical features of patients infectedwith 2019 novel coronavirus in Wuhan, China.Lancet 2020;395:497-506. https://doi.org/10.1016/S0140-6736(20)30183-5.
Vardeny O, Madjid M, Solomon SD. Chapter94. Endemic and pandemic viral illnessesand cardiovascular disease: Influenza andCOVID-19. In: Libby P, Bonow RO, Mann DL,Tomaselli GF, Bhatt D, Solomon SD, et al., eds.Braunwald’s Heart Disease: A Textbook of CardiovascularMedicine. 12th ed. Ámsterdam, PaísesBajos: Elsevier; 2022. p. 1751-1765.
Lopez G, Ramírez M, Torres M. Fisiopatologíadel daño multiorgánico en la infección porSARS-CoV-2. Acta Pediatr Mex 2020;41:S27-41.
Rodríguez F, Durán M. Un acercamiento a laspruebas rápidas para la determinación de antígenosde SARS-CoV-2 en muestras de hisopadonasofaríngeo. Rev Colegio de Microb QuímClín de Costa Rica 2021;26:146-157.
Drain PK. Rapid diagnostic testing for SARSCoV-2. N Engl J Med 2022;386:264-272.https://doi.org/10.1056/NEJMcp2117115.
Gestoso-Pecellín L, García-Flores Y, González-Quintana P, Marrero-Arencibia JL. Recomendacionesy uso de los diferentes tipos detest para detección de infección por SARSCOV-2. Enferm Clin 2021;31:S40-S48. https://doi.org/10.1016/j.enfcli.2020.10.001.
Soldevila-Langa L, Sallent LV, Roure-Díez S.Interpretación de las pruebas diagnósticas dela COVID-19. FMC 2021;28:167-173. https://doi.org/10.1016/j.fmc.2021.01.005.
Vizcaíno-Carruyo JC, Tangarife-CastañoVJ, Campuzano-Zuluaga G, Toro-MontoyaAI. COVID-19 anticuerpos IgM/IgG por ensayoinmunocromatográfico (prueba rápida).Med Lab 2020;24:255-257. https://doi.org/10.36384/01232576.302.
Vidal-Anzardo M, Solis G, Solari L, Minaya G,Ayala-Quintanilla B, Astete-Cornejo J, et al.Evaluación en condiciones de campo de unaprueba serológica rápida para detección deanticuerpos IgM e IgG contra SARS-CoV-2. RevPerú Med Exp Salud Publica 2020;37:203-209.
Dong X, Cao Y-y, Lu X-x, Zhang J-j, Du H, YanY-q, et al. Eleven faces of coronavirus disease2019. Allergy 2020;75:1699-1709. https://doi.org/10.1111/all.14289.
Horn MP, Jonsdottir HR, Brigger D, DamontiL, Suter-Riniker F, Endrich O, et al. Serologicaltesting for SARS-CoV-2 antibodies in clinical practice:A comparative diagnostic accuracy study.Allergy 2022. https://doi.org/10.1111/all.15206.
Salazar-Carranza L, Maldonado-Santacruz F,Cruz-Villegas J. La PCR como prueba para confirmarcasos vigentes de COVID-19. Recimundo2020;4:64-74. https://doi.org/10.26820/recimundo/4.(2).mayo.2020.64-74.
Tahamtan A, Ardebili A. Real-time RT-PCR inCOVID-19 detection: issues affecting the results.Expert Rev Mol Diagn 2020;20:453-454. https://doi.org/10.1080/14737159.2020.1757437.
Pan Y, Zhang D, Yang P, Poon LLM, Wang Q.Viral load of SARS-CoV-2 in clinical samples.Lancet Infect Dis 2020;20:411-412. https://doi.org/10.1016/S1473-3099(20)30113-4.
Habibzadeh P, Mofatteh M, Silawi M, GhavamiS, Faghihi MA. Molecular diagnostic assaysfor COVID-19: an overview. Crit Rev Clin Lab Sci2021;58:385-398. https://doi.org/10.1080/10408363.2021.1884640.
Dhar BC. Diagnostic assay and technology advancementfor detecting SARS-CoV-2 infectionscausing the COVID-19 pandemic. Anal BioanalChem 2022;414:2903-2934. https://doi.org/10.1007/s00216-022-03918-7.
Serrano-Cumplido A, Ruiz Garcia A, Segura-Fragoso A, Olmo-Quintana V, Micó PérezRM, Barquilla-García A, et al. Application ofthe PCR number of cycle threshold value (Ct) inCOVID-19. Semergen 2021;47:337-341. https://doi.org/10.1016/j.semerg.2021.05.003.
Thompson D, Lei Y. Mini review: Recent progressin RT-LAMP enabled COVID-19 detection.Sens Actuators Rep 2020;2:100017. https://doi.org/10.1016/j.snr.2020.100017.
Zhao J, Yuan Q, Wang H, Liu W, Liao X, SuY, et al. Antibody responses to SARS-CoV-2 inpatients with novel coronavirus disease 2019.Clin Infect Dis 2020;71:2027-2034. https://doi.org/10.1093/cid/ciaa344.
Zhu A, Zakusilo G, Lee MS, Kim J, Kim H, YingX, et al. Laboratory parameters and outcomesin hospitalized adults with COVID-19: a scopingreview. Infection 2022;50:1-9. https://doi.org/10.1007/s15010-021-01659-w.
Minh LHN, Abozaid AA, Ha NX, Le Quang L,Gad AG, Tiwari R, et al. Clinical and laboratoryfactors associated with coronavirus disease2019 (Covid-19): A systematic review and metaanalysis.Rev Med Virol 2021;31:e2288. https://doi.org/10.1002/rmv.2288.
Calvo-Arrieta K, Chinchilla-Ureña AL, Orozco-Barquero A, Ibarra-Ureña R, Navarro-SolísAJ. Mecanismos subyacentes a la linfopenia enla infección por SARS CoV-2, y su relación conla severidad de la enfermedad. Ciencia y Salud2021;5:87-94. https://doi.org/10.34192/cienciaysalud.v5i3.263.
Suárez-Reyes A, Villegas-Valverde CA. Característicasy especialización de la respuestainmunitaria en la COVID-19. Rev Fac Med2020;63:7-18.
Wang F, Nie J, Wang H, Zhao Q, Xiong Y,Deng L, et al. Characteristics of peripherallymphocyte subset alteration in COVID-19pneumonia. J Infect Dis 2020;221:1762-1769.https://doi.org/10.1093/infdis/jiaa150.
Galicia GC, Santana HGP, Vega S. Asociaciónde ferritina con deterioro ventilatorio y mortalidaddebido a COVID-19 en terapia intensiva.Med Crit 2021;35:121-129. https://doi.org/10.35366/100000.
Reyes-Reyes E. Inmunopatogenia en la evolucióndel paciente grave por la COVID-19. RevElect Dr Zoilo E 2020;45.
Rosa CM. Dímero D y COVID-19. BuenosAires, Argentina: Grupo Argentino Colaborativode Hemostasia y Trombosis (CAHT);2020. Día Mundial de la Trombosis. Artículode divulgación. Acceso 15 de enero de 2022.Disponible en https://www.grupocaht.com/wp-content/uploads/2020/10/DD-y-COVID-19-DMT-Set-2020.pdf.
Tang N, Li D, Wang X, Sun Z. Abnormal coagulationparameters are associated with poorprognosis in patients with novel coronaviruspneumonia. J Thromb Haemost 2020;18:844-847. https://doi.org/10.1111/jth.14768.
Poggiali E, Zaino D, Immovilli P, Rovero L,Losi G, Dacrema A, et al. Lactate dehydrogenaseand C-reactive protein as predictorsof respiratory failure in COVID-19 patients.Clin Chim Acta 2020;509:135-138. https://doi.org/10.1016/j.cca.2020.06.012.
Fan BE, Chong VCL, Chan SSW, Lim GH, LimKGE, Tan GB, et al. Hematologic parametersin patients with COVID-19 infection. Am J HematolOncol 2020;95:E131-134. https://doi.org/10.1002/ajh.25774.
Hirsch JS, Ng JH, Ross DW, Sharma P, ShahHH, Barnett RL, et al. Acute kidney injury inpatients hospitalized with COVID-19. KidneyInt 2020;98:209-218. https://doi.org/10.1016/j.kint.2020.05.006.
Yang Q, Yang X. Incidence and risk factors ofkidney impairment on patients with COVID-19:A meta-analysis of 10180 patients. PLoS One2020;15:e0241953. https://doi.org/10.1371/journal.pone.0241953.
Ramírez F. Influencia del aumento de ureay creatinina en la mortalidad por COVID-19.Riobamba, Ecuador: Universidad Nacional deChimborazo. Facultad de Ciencias de la Salud.Carrera de Laboratorio Clínico e Histopatológico;2021. Trabajo de Titulación. Acceso 06 deenero de 2021. Disponible en http://dspace.unach.edu.ec/bitstream/51000/7970/1/5.-T E S I S % 2 0 Fe r n a n d o % 2 0 Ca r l o s % 2 0Ram%c3%adrez%20Paguay-LAB-CLIN.pdf.
Hachim MY, Hachim IY, Naeem KB, HannawiH, Salmi IA, Hannawi S. D-dimer, troponin,and urea level at presentation with COVID-19can predict icu admission: A single centeredstudy. Front Med (Lausanne) 2020;7:585003.https://doi.org/10.3389/fmed.2020.585003.
Pei G, Zhang Z, Peng J, Liu L, Zhang C, Yu C,et al. Renal involvement and early prognosisin patients with COVID-19 pneumonia. J AmSoc Nephrol 2020;31:1157-1165. https://doi.org/10.1681/asn.2020030276.
Suárez S. Daño hepático por la COVID-19.Actualización médica del SAR-CoV-2. Boletíncientífico del CIMEQ 2020;1:7.
Chai X, Hu L, Zhang Y, Han W, Lu Z, Ke A, etal. Specific ACE2 expression in cholangiocytesmay cause liver damage after 2019-NCoV infection.bioRxiv 2020:2020.2002.2003.931766.https://doi.org/10.1101/2020.02.03.931766.
Lee IC, Huo TI, Huang YH. Gastrointestinal andliver manifestations in patients with COVID-19. JChin Med Assoc 2020;83:521-523. https://doi.org/10.1097/jcma.0000000000000319.
McGrowder DA, Miller F, Anderson-Cross M,Anderson-Jackson L, Bryan S, Dilworth L. Abnormalliver biochemistry tests and acute liver injuryin COVID-19 patients: Current evidence andpotential pathogenesis. Diseases 2021;9:50.https://doi.org/10.3390/diseases9030050.
Iwasaki S, Fujisawa S, Nakakubo S, KamadaK, Yamashita Y, Fukumoto T, et al. Comparisonof SARS-CoV-2 detection in nasopharyngealswab and saliva. J Infect 2020;81:e145-147.https://doi.org/10.1016/j.jinf.2020.05.071.
Zuo MZ, Huang YG, Ma WH, Xue ZG, ZhangJQ, Gong YH, et al. Expert recommendationsfor tracheal intubation in critically ill patientswith noval coronavirus disease 2019.Chin Med Sci J 2020;35:105-109. https://doi.org/10.24920/003724.
Kipkorir V, Cheruiyot I, Ngure B, Misiani M,Munguti J. Prolonged SARS-CoV-2 RNA detectionin anal/rectal swabs and stool specimensin COVID-19 patients after negative conversionin nasopharyngeal RT-PCR test. J Med Virol2020;92:2328-2331. https://doi.org/https://doi.org/10.1002/jmv.26007.
Organización Panamericana de la Salud(PAHO). Directrices de laboratorio para la deteccióny el diagnóstico de la infección por elvirus responsable de la COVID-19. Washington,Estados Unidos de América: Organización Panamericanade la Salud; 2020. Acceso 15 de enerode 2022. Disponible en https://iris.paho.org/handle/10665.2/52471.
Aguilar-Ramírez P, Enriquez-Valencia Y,Quiroz-Carrillo C, Valencia-Ayala E, de León-Delgado J, Pareja-Cruz A. Pruebas diagnósticaspara la COVID-19: la importancia delantes y el después. Horizonte Médico (Lima)2020;20:e1231. https://doi.org/10.24265/horizmed.2020.v20n2.14.