2021, Number 2
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Rev Mex Med Forense 2021; 6 (2)
Efficiency of five X-STR markers for forensic identification in a western Mexican mestizo population
Medina-Mora Y, Javalera-Castro D, Rivas F, Valle Y, Del Toro-Arreola A, Daneri-Navarro A, Topete A, Padilla-Gutiérrez JR, Quintero-Ramos A
Language: Spanish
References: 44
Page: 38-58
PDF size: 438.96 Kb.
ABSTRACT
Introduction: The short tandem repeats of the X chromosome (X-STR) are useful in forensic identification and kinship testing. There are currently several studies on X-STR; however the panel includes several markers from the same linkage group. By including markers from different linkage group, the test is more efficient.
Objective: To establish a panel of five X-STR loci, for application in forensic genetic studies in mestizo population of Western Mexico.
Methodology: Five X-STR loci were typed in samples of 379 unrelated individuals from Western Mexico by PCR, 7% polyacrylamide gels and silver staining. Allelic and haplotypic frequencies were estimated, as well as forensic parameters.
Results: The combined data showed a discrimination power of 0.999389 and 0.999995 in men and women respectively. The combined mean probability of exclusion was 0.998797 for trio and 0.990701 for duo cases.
Discussion: Various reports, which use the Decaplex system, obtain discrimination values in women of 99.9999% and in men of 99.9998%, results very close to ours and with only using five markers.
Conclusion: The five X-STR loci analyzed are highly informative for use in forensic issues.
REFERENCES
Bobillo, C., Sala, A., Gusmão, L., & Corach, D. (2011). Genetic analysis of 10 X-STRs in Argentinian population. Forensic Science International. Genetics, 5(1), e14–16. http://doi.org/10.1016/j.fsigen.2009.11.005
Buckleton, J. S., Bright, J.-A., & Taylor, D. (2005). Forensic DNA Evidence Interpretation, Second Edition. CRC Press.
Chambers, G. K., & MacAvoy, E. S. (2000). Microsatellites: consensus and controversy. Comparative Biochemistry and Physiology. Part B, Biochemistry & Molecular Biology, 126(4), 455–476.
Chen L, Guo Y, Xiao C, Wu W, Lan Q, Fang Y, Chen J, Zhu B. Genetic polymorphisms and forensic efficiency of 19 X-chromosomal STR loci for Xinjiang Mongolian population. (2018). PeerJ, 3;6:e5117. doi: 10.7717/peerj.5117.
Cortés-Trujillo, I., Ramos-González, B., Salas-Salas, O., Zuñiga-Chiquette, F., Zetina Hernández, A., Martínez-Cortés, G., Rangel-Villalobos, H. (2017). Forensic efficiency parameters of the Investigator Argus X-12 kit in women from two Mestizo and seven Amerindian populations from Mexico. Legal Medicine (Tokyo, Japan), 26, 62–64. https://doi.org/10.1016/j.legalmed.2017.03.006
Diegoli, T. M., Linacre, A., & Coble, M. D. (2014). Population genetic data for 15 X chromosomal short tandem repeat markers in three U.S. populations. Forensic Science International. Genetics, 8(1), 64–67. http://doi.org/10.1016/j.fsigen.2013.07.008
Di Santo Meztler G. Paula, Glesmann Laura A., Esteban M. Esther, Del Palacio Santiago, Méndez Marta G., Catanesi Cecilia I. (2019). Comparative Study of 10 X-STR Markers in Populations of Northeast Argentina. Human Biology 91(1): 9–20.
Doležel, J., Vrána, J., Safář, J., Bartoš, J., Kubaláková, M., & Simková, H. (2012). Chromosomes in the flow to simplify genome analysis. Functional & Integrative Genomics, 12(3), 397–416. http://doi.org/10.1007/s10142-012-0293-0
ENCODE Project Consortium. (2012). An integrated encyclopedia of DNA elements in the human genome. Nature, 489(7414), 57–74. http://doi.org/10.1038/nature11247
Gomes, I., Prinz, M., Pereira, R., Meyers, C., Mikulasovich, R. S., Amorim, A., Gusmão, L. (2007). Genetic analysis of three US population groups using an X-chromosomal STR decaplex. International Journal of Legal Medicine, 121(3), 198–203. http://doi.org/10.1007/s00414-006-0146-2
Gorodezky, C., Alaez, C., Vázquez-García, M. N., de la Rosa, G., Infante, E., Balladares, S., Muñoz, L. (2001). The genetic structure of Mexican Mestizos of different locations: tracking back their origins through MHC genes, blood group systems, and microsatellites. Human Immunology, 62(9), 979–991.
Guardado Estrada M, Quiepo G, Meraz Rios M, Berumen Campo J (2008). Diversidad genética en la población mexicana: Utilización de marcadores de ADN. Revista médica del Hospital General de México, SS, 71:162-74.
Gusmão, L., Alves, C., Gomes, I., & Sánchez-Diz, P. (2012). Capillary electrophoresis of an X-chromosome STR decaplex for kinship deficiency cases. Methods in Molecular Biology (Clifton, N.J.), 830, 57–71. https://doi.org/10.1007/978-1-61779-461-2_5
Guo J, Ji J, He G, Ren Z, Zhang H, Wang Q, Yang M, Nabijiang Y, Zhang Z, Zhang J, Huang J, Wang CC. (2019) Genetic structure and forensic characterisation of 19 X-chromosomal STR loci in Guizhou Sui population. Ann Hum Biol, 46(3):246-253. doi: 10.1080/03014460.2019.1623911.
Gršković, B., Zidkova, A., Stenzl, V., Popović, M., Primorac, D., & Mršić, G. (2013). Analysis of 8 X-chromosomal markers in the population of central Croatia. Croatian Medical Journal, 54(3), 238–247.
Hinch, A. G., Altemose, N., Noor, N., Donnelly, P., & Myers, S. R. (2014). Recombination in the Human Pseudoautosomal Region PAR1. PLoS Genetics, 10(7). https://doi.org/10.1371/journal.pgen.1004503
Jeffreys, A., Wilson, V. E. A., Thein, S. L., Weatherall, D. J., & Ponder, B. A. J. (1986). DNA «fingerprints» and segregation analysis of multiple markers in human pedigrees. American journal of human genetics, 39(1), 11-24.
Jobling, M. A., & Gill, P. (2004). Encoded evidence: DNA in forensic analysis. Nature Reviews. Genetics, 5(10), 739–751. http://doi.org/10.1038/nrg1455
Kelkar, Y. D., Eckert, K. A., Chiaromonte, F., & Makova, K. D. (2011). A matter of life or death: how microsatellites emerge in and vanish from the human genome. Genome Research, 21(12), 2038–2048. http://doi.org/10.1101/gr.122937.111
Kling, D. (2018). Curiosities of X chromosomal markers and haplotypes. International Journal of Legal Medicine, 132(2), 361-371. https://doi.org/10.1007/s00414-017-1612-8
Lichten, M., & de Massy, B. (2011). The impressionistic landscape of meiotic recombination. Cell, 147(2), 267–270. http://doi.org/10.1016/j.cell.2011.09.038
Lisker, R., Ramírez, E., & Babinsky, V. (1996). Genetic structure of autochthonous populations of Meso-America: Mexico. Human Biology, 68(3), 395–404.
Mariscal Ramos, C., Martínez-Cortes, G., Ramos-González, B., & Rangel-Villalobos, H. (2018). Forensic parameters of the X-STR Decaplex system in Mexican populations. Legal Medicine (Tokyo, Japan), 31, 38-41.
Martins, J. A., Martins, D. P., Oliveira-Brancati, C. I. F., Martinez, J., Cicarelli, R. M. B., & Souza, D. R. S. (2017). Genetic characterization of an X-STR decaplex system in the State of Mato Grosso, Brazil: distribution, forensic efficiency and population structure. International Journal of Legal Medicine, 131(6), 1523-1530. https://doi.org/10.1007/s00414-017-1578-6
Miller SA, D. and Dykes D, Polesky HF.(1988) A Simple salting out procedure for extracting DNA from Human Nucleated Cells. Nucleic Acids Res. Jan 1;16:12–5.
Padilla-Gutiérrez, J. R., Valle, Y., Quintero-Ramos, A., Hernández, G., Rodarte, K., Ortiz, R., Rivas, F. (2008). Population data and mutation rate of nine Y-STRs in a mestizo Mexican population from Guadalajara, Jalisco, México. Legal Medicine (Tokyo, Japan), 10(6), 319–320. http://doi.org/10.1016/j.legalmed.2008.03.004
Prieto-Fernández, E., Núñez, C., Baeta, M., Jiménez-Moreno, S., Martínez-Jarreta, B., & de Pancorbo, M. M. (2016). Forensic Spanish allele and haplotype database for a 17 X-STR panel. Forensic Science International. Genetics, 24, 120–123. https://doi.org/10.1016/j.fsigen.2016.06.016
Rębała, K., Kotova, S. A., Rybakova, V. I., Zabauskaya, T. V., Shyla, A. A., Spivak, A. A. Szczerkowska, Z. (2015). Variation of X-chromosomal microsatellites in Belarus within the context of their genetic diversity in Europe. Forensic Science International. Genetics, 16, 105–111. http://doi.org/10.1016/j.fsigen.2014.12.011
Ren Z, Guo J, He G, Zhang H, Zou X, Zhang H, Wang Q, Ji J, Yang M, Zhang J, Zhang Z, Nabijiang Y, Huang J, Wang CC. (2019). Forensic genetic polymorphisms and population structure of the Guizhou Bouyei people based on 19 X-STR loci. Ann Hum Biol, 46(7-8):574-580. doi: 10.1080/03014460.2019.1697362.
Robino, C., Giolitti, A., Gino, S., & Torre, C. (2006). Development of two multiplex PCR systems for the analysis of 12 X-chromosomal STR loci in a northwestern Italian population sample. International Journal of Legal Medicine, 120(5), 315–318. http://doi.org/10.1007/s00414-006-0115-9
Ross, M. T., Grafham, D. V., Coffey, A. J., Scherer, S., McLay, K., Muzny, D., Bentley, D. R. (2005). The DNA sequence of the human X chromosome. Nature, 434(7031), 325–337. https://doi.org/10.1038/nature03440
Silva-Zolezzi, I., Hidalgo-Miranda, A., Estrada-Gil, J., Fernandez-Lopez, J. C., Uribe-Figueroa, L., Contreras, A., Jimenez-Sanchez, G. (2009). Analysis of genomic diversity in Mexican Mestizo populations to develop genomic medicine in Mexico. Proceedings of the National Academy of Sciences of the United States of America, 106(21), 8611–8616. http://doi.org/10.1073/pnas.0903045106
Slatkin, M. (2008). Linkage disequilibrium--understanding the evolutionary past and mapping the medical future. Nature Reviews. Genetics, 9(6), 477-485. https://doi.org/10.1038/nrg2361
Sun, J. X., Helgason, A., Masson, G., Ebenesersdóttir, S. S., Li, H., Mallick, S., Stefansson, K. (2012). A direct characterization of human mutation based on microsatellites. Nature Genetics, 44(10), 1161–1165.
Sweet D, Lorente M, Valenzuela A, Lorente J, Alvarez JC. (1996) Increasing DNA extraction yield from saliva stains with a modified Chelex method. Forensic Science International. Dec 27;83(3):167–77.
Szibor, R., Edelmann, J., Hering, S., Gomes, I., & Gusmão, L. (2009). Nomenclature discrepancies in the HPRTB short tandem repeat. International Journal of Legal Medicine, 123(2), 185–186. http://doi.org/10.1007/s00414-008-0314-7
Teobal, Mayra Xolo, Alfonso Alexander-Aguilera, Ida Soto-Rodríguez, José Armando Lozada-García, and Carolina Barrientos-Salcedo (2020). Genetic analysis of three STR loci (TPOX, FGA, D18S51) in the population of Coyopolan, Veracruz, Mexico. Revista Mexicana de Medicina Forense y Ciencias de la Salud 5(1): 24–33.
Tillmar, A. O., Kling, D., Butler, J. M., Parson, W., Prinz, M., Schneider, P. M., Gusmão, L. (2017). DNA Commission of the International Society for Forensic Genetics (ISFG): Guidelines on the use of X-STRs in kinship analysis. Forensic Science International. Genetics, 29, 269-275. https://doi.org/10.1016/j.fsigen.2017.05.005
Tillmar, A. O., Mostad, P., Egeland, T., Lindblom, B., Holmlund, G., & Montelius, K. (2008). Analysis of linkage and linkage disequilibrium for eight X-STR markers. Forensic Science International. Genetics, 3(1), 37-41. https://doi.org/10.1016/j.fsigen.2008.09.006
Valle, Y., Padilla-Gutiérrez, J. R., Rodarte, K., Quintero-Ramos, A., Ortiz, R., Hernández-Zaragoza, G., & Rivas, F. (2008). Five X-chromosome short tandem repeats in a Western Mexican population. Clinical Chemistry and Laboratory Medicine: CCLM / FESCC, 46(10), 1388–1390. http://doi.org/10.1515/CCLM.2008.279
Wang, S., Ray, N., Rojas, W., Parra, M. V., Bedoya, G., Gallo, C., Ruiz-Linares, A. (2008). Geographic patterns of genome admixture in Latin American Mestizos. PLoS Genetics, 4(3), e1000037. https://doi.org/10.1371/journal.pgen.1000037 42. Weir BS, Cardon LR, Anderson AD, Nielsen DM, Hill WG (2005). Measures of human population structure show heterogeneity among genomic regions. Genome Res 15: 1468–1476 43. Wright S. (1969). Evolution and the genetics of populations. Chicago, Illinois, USA: University of Chicago.
Xch (http://www.chrx-str.org/) 2019
Zhang, Y.-D., Shen, C.-M., Meng, H.-T., Guo, Y.-X., Dong, Q., Yang, G., Zhu, B.-F. (2016). Allele and haplotype diversity of new multiplex of 19 ChrX-STR loci in Han population from Guanzhong region (China). ELECTROPHORESIS, 37(12), 1669-1675. https://doi.org/10.1002/elps.201500425
Zidkova, A., Coufalova, P., & Capek, P. (2014). X-STR decaplex study on the population of Czech Republic. International Journal of Legal Medicine, 128(2), 271-272.https://doi.org/10.1007/s00414-013-0860-5