2006, Número 2
<< Anterior
Bioquimia 2006; 31 (2)
Detección e identificación de bacterias causantes de enfermedades transmitidas por alimentos mediante la reacción en cadena de la polimerasa
Rojas-Herrera RA, González-Flores T
Idioma: Español
Referencias bibliográficas: 68
Paginas: 69-76
Archivo PDF: 109.88 Kb.
RESUMEN
La lucha contra los microorganismos patógenos, causantes de enfermedades transmitidas por alimentos (ETA) requiere de procedimientos adecuados de inspección sanitaria, lo que ha llevado al desarrollo de métodos cada vez más rápidos y efectivos para la detección e identificación de bacterias nocivas en las áreas en las que la seguridad biológica es de mucha importancia. Las técnicas de identificación basadas en el cultivo y las características fenotípicas de las bacterias son laboriosas y pueden requerir varias semanas para obtener resultados, lo cual no resulta viable cuando se analizan alimentos perecederos como los lácteos y la carne fresca. La aplicación de métodos de detección independientes de cultivo, como la reacción en cadena de la polimerasa (PCR) puede ayudar a resolver los problemas antes mencionados, aun cuando es necesario que estos métodos cuenten con una validación internacional. En el presente trabajo se revisa la utilidad, ventajas y desventajas de la PCR como herramienta para la detección e identificación de bacterias patógenas en muestras de alimentos, así como las nuevas tendencias en el uso de estas herramientas moleculares de diagnóstico y los esfuerzos actuales tendientes a su estandarización internacional.
REFERENCIAS (EN ESTE ARTÍCULO)
Autio T, Hielm S, Miettinen M, jöberg A-M, Aarnisalo K, Björkroth J, et al. Sources of Listeria monocytogenes contamination in a cold-smoked rainbow trout processing plant detected by pulsed-field gel electrophoresis typing. Appl Environ Microbiol 1999; 65: 150-155.
Venkateswaran K, Dohmoto N, Harayama S. Cloning and nucleotide sequence of the gyrB gene of Vibrio parahaemolyticus and its application in detection of this pathogen in shrimp. Appl Environ Microbiol 1998; 64: 681-687.
Hielm S, Björkroth J, Hyytiä E, Korkeala H. Prevalence of Clostridium botulinum in finnish trout farms: pulsed-field gel electrophoresis typing reveals extensive genetic diversity among type E isolates. Appl Environ Microbiol 1998; 64: 4161-4167.
Fach P, Perelle S, Dilasser F, Grout J, Dargaignaratz C, Botella L, et al. Detection by PCR-enzyme-linked immunosorbent assay of Clostridium botulinum in fish and environmental samples from a coastal area in northern France. Appl Environ Microbiol 2002; 68: 5870-5876.
Blackburn C, McClure P. Introduction. En: Blackburn, C y McClure, P. Foodborne pathogens. Hazards, risk analysis and control. Boca Raton, FL: CRC Press; 2002: 3-12.
Agron P, Walker R, Kinde H, Sherilyn J, Hayes D, Wollard J, et al. Identification by subtractive hybridization of sequences specific for Salmonella enterica serovar Enteriditis. Appl Environ Microbiol 2002; 67: 4984-4991.
Nevas M, Hielm S, Lindström M, Horn H, Koivulehto K, Korkeala H. High prevalence of Clostridium botulinum types A and B in honey samples detected by polymerase chain reaction. Int J Food Microbiol 2002; 72: 45-52.
Abushelaibi A, Sofos J, Samelis J, Kendall P. Survival and growth of Salmonella in reconstituted infant cereal hydrated with water, milk or apple juice and stored at 4°C, 15°C and 25°C. Food Microbiol 2003; 20: 17-25.
Chen J, Johnson R, Griffiths M. Detection of verotoxigenic Escherichia coli by magnetic capture-hybridization PCR. Appl Environ Microbiol 1998; 64: 147-152.
Chen S, Xu R, Yee A, Wu H, Wang C, Read S, et al. An automated fluorescent PCR method for detection of Shiga toxin-producing Escherichia coli in foods. Appl Environ Microbiol 1998; 64: 4210-4116.
Fagan P, Hornitzky M, Bettelheim K, Djordjevic S. Detection of Shiga-like toxin (stx1 and stx2), intimin (eaeA), and enterohemorrhagic Escherichia coli (EHEC) hemolysin (EHEC hlyA) genes in animal feces by multiplex PCR. Appl Environ Microbiol 1999; 65: 868-872.
Johnson J, Brooke C, Fritschel S. Comparison of the BAX for screening E. coli O157:H7 method with conventional methods for detection of extremely low levels of Escherichia coli O157:H7 in ground beef. Appl Environ Microbiol 1998; 64: 4390-4395.
Vandenberghe J, Verdonck L, Robles-Arozarena R, Rivera G, Bolland A, Balladares M, et al. Vibrios associated with Litopenaeus vannamei larvae, postlarvae, roodstock, and hatchery probionts. Appl Environ Microbiol 1999; 65: 2592-2597.
Daffonchio D, Borin S, Frova G, Gallo R, Mori E, Fani R, et al. A randomly amplified polymorphic DNA marker specific for the Bacillus cereus group is diagnostic for Bacillus anthracis. Appl Environ Microbiol 1999; 65: 1298-1303.
Eaton T, Gasson M. Molecular screening of Enterococcus virulence determinants and potential for genetic exchange between food and medical isolates. Appl Environ Microbiol 2001; 67: 1628-1635.
Coetsier C, Vannuffel P, Blondeel N, Denef J, Cocito C, Gala J. Duplex PCR for differential identification of Mycobacterium bovis, M. avium, and M. avium subsp. paratuberculosis in formalin- fixed paraffin-embedded tissues from cattle. J Clin Microbiol 2000; 38: 3048-3054.
Betts R, Blackburn C. Detecting pathogens in food. In: Betts R y Blackburn C. Foodborne pathogens: Hazards, risk analysis and control. Boca Raton, Fl.: CRC Press; 2002: 13-52.
Saiki R, Scharf S, Faloona F, Mullis K, Horn G, Erlich H, et al. Enzymatic amplification of b-globin genomic sequences and restriction site analysis for diagnosis of sickle cell anemia. Science 1985; 230: 1350-1354.
Mullis K. The unusual origin of the polymerase chain reaction. Sci Am 1999;36-43.
Kehl S. Role of the laboratory in the diagnosis of enterohemorrhagic Escherichia coli infections. J Clin Microbiol 2002; 40: 2711-2715.
Paton A, Paton J. Detection and characterization of shiga toxigenic Escherichia coli by using multiplex PCR assays for stx1, stx2, eaeA, enterohemorrhagic E. coli hlyA, rfbO111 and rfbO157. J Clin Microbiol 1998; 36: 598-602.
Reischl U, Youssef M, Kilwinski J, Lehn N, Zhang W, Karch H, et al. Real-time fluorescence PCR assays for detection and characterization of shiga toxin, intimin, and enterohemolysin genes from shiga toxin-producing Escherichia coli. J Clin Microbiol 2002; 40: 2555-2565.
Paton A, Paton J. Direct detection and characterization of shiga toxigenic Escherichia coli by multiplex PCR for stx1, stx2, eae, ehxA, and saa. J Clin Microbiol 2002; 40: 271-274.
Wang G, Clark C, Rodgers F. Detection in Escherichia coli of the genes encoding the major virulence factors, the genes defining the O157:H7 serotype, and components of the type 2 Shiga toxin family by multiplex PCR. J Clin Microbiol 2002; 40: 3613-3619.
Normanno G, Dambrosio P, Quaglia N, Montagna D, Chiocco D, Celano G. Typing of Escherichia coli O157 strains isolated from fresh sausage. Food Microbiol 2004; 21: 79-82.
Paton A, Paton J. Direct detection of shiga toxigenic Escherichia coli strains belonging to serogroups O111, O157, and O113 by multiplex PCR. J Clin Microbiol 1999; 37: 3362-3365.
Paton A, Paton J. Molecular characterization of the locus encoding biosynthesis of the lipopolysaccharide O antigen of Escherichia coli Serotype O113. Infect Immun 1999; 67: 5930-5937.
Wang L, Curd H, Qu W, Reeves P. Sequencing of Escherichia coli O111 O-antigen gene cluster and identification of O111-specific genes. J Clin Microbiol 1998; 36: 3182-3187.
Desmarchelier P, Bilge S, Fegan N, Mills L, Vary J, Tarr P. A PCR specific for Escherichia coli O157 based on the rfb locus encoding O157 lipopolysaccharide. J Clin Microbiol 1998; 36: 1801-1804.
Wang L, Reeves P. Organization of Escherichia coli O157 O antigen gene cluster and identification of its specific genes. Infect Immun 1998; 66: 3545-3551.
Maurer J, Schmidt D, Petrosko P, Sánchez S, Bolton L, Lee M. Development of primers to O-Antigen biosynthesis genes for specific detection of Escherichia coli O157 by PCR. Appl Environ Microbiol 1999; 65: 2954-2960.
Scheu P, Berghof K, Stahl U. Detection of pathogenic and spoilage microorganisms in food with the polymerase chain reaction. Food Microbiol 1998; 15: 13-31.
Chamberlain J, Gibbs R, Rainer J, Nguyen P, Caskey C. Deletion screening of the Duchenne muscular dystrophy locus via multiplex DNA amplification. Nucleic Acids Res 1988; 16: 11141-11156.
Saiki R, Gelfand D, Stoffel S, Scharf S, Higuchi R, Horn G, et al. Primer-directed enzymatic amplification of DNA with a thermostable DNA polymerase. Science 1988; 239: 487-491.
Yamada S, Ohashi E, Agata N, Venkateswaran K. Cloning and nucleotide sequence analysis of gyrB of Bacillus cereus, B. thuringiensis, B. mycoides, and B. anthracis and their application to the detection of B. cereus in rice. Appl Environ Microbiol 1999; 65: 1483-1490.
Sharma V, Carlson S. Simultaneous detection of Salmonella strains and Escherichia coli O157:H7 with fluorogenic PCR and single-enrichment-broth culture. Appl Environ Microbiol 2000; 66: 5472-5476.
Lindstrom M, Keto R, Markkula A, Nevas M, Hielm S, Korkeala H. Multiplex PCR assay for detection and identification of Clostridium botulinum Types A, B, E, and F in food and fecal material. Appl Environ Microbiol 2001; 67: 5694-5699.
Knutsson R, Lofstrom C, Grage H, Hoorfar J, Radstrom P. Modeling of 5' nuclease real-time responses for optimization of a high-throughput enrichment PCR procedure for Salmonella enterica. J Clin Microbiol 2002; 40: 52-60.
Wilson I. Inhibition and facilitation of nucleic acid amplification. Appl Environ Microbiol 1997; 63: 3741-3751.
Gentry-Weeks C, Hutcheson H, Kim L, Bolte D, Traub-Dargatz J, Morley P, et al. Identification of two phylogenetically related organisms from feces by PCR for detection of Salmonella spp. J Clin Microbiol 2002; 40: 1487-1492.
Fach P, Popoff M. Detection of enterotoxigenic Clostridium perfringens in food and fecal samples with a duplex PCR and the slide latex agglutination test. Appl Environ Microbiol 1997; 63: 4232-4236.
Lampel K, Orlandi P, Kornegay L. Improved template preparation for PCR-based assays for detection of food-borne bacterial pathogens. Appl Environ Microbiol 2000; 66: 4539-4542.
Al-Soud W, Radstrom P. Purification and characterization of PCR-inhibitory components in blood cells. J Clin Microbiol 2001; 39: 485-493.
Rossen L, Norskov P, Holmstrom K, Rasmussen O. Inhibition of PCR by components of food samples, microbiological diagnosis assays and DNA-extraction solutions. J Food Microbiol 1992; 17: 37-45.
Kudva I, Hatfield P, Hovde C. Characterization of Escherichia coli O157:H7 and other Shiga toxin-producing E. coli serotypes isolated from sheep. J Clin Microbiol 1997; 35: 892-899.
Cornejo B, Sahún-Ruíz A, Suárez-Güemes F, Thornton C, Ficht T, Adams L. Comparison of C18-carboxypropylbetaine and glass bead DNA extraction methods for detection of Mycobacterium bovis in bovine milk samples and analysis of samples by PCR. Appl Environ Microbiol 1998; 64: 3099-3101.
Malorny B, Hoorfar J, Bunge C, Helmuth R. Multicenter validation of the analytical accuracy of Salmonella PCR: Towards an international standard. Appl Environ Microbiol 2003; 69: 290-296.
Lubeck P, Wolffs P, On S, Ahrens P, Radstrom P, Hoorfar J. Toward an international standard for PCR-based detection of food-borne thermotolerant campylobacters: Assay development and analytical validation. Appl Environ Microbiol 2003; 69: 5664-5669.
Lubeck PS, Cook N, Wagner M, Fach P, Hoorfar J. Toward an international standard for PCR-based detection of food-borne thermotolerant campylobacters: Validation in a multicenter collaborative trial. Appl Environ Microbiol 2003; 69: 5670-5672.
Houf K, De Zutter L, Van Hoof J, Vandamme P. Assessment of the genetic diversity among arcobacters isolated from poultry products by using two PCR-based typing methods. Appl Environ Microbiol 2002; 68: 2172-2178.
Waage A, Vardund T, Lund V, Kapperud G. Detection of small numbers of Campylobacter jejuni and Campylobacter coli cells in environmental water, sewage, and food samples by a seminested PCR assay. Appl Environ Microbiol 1999; 65: 1636-1643.
Lai-King N, Bin Kingombe C, Yan W, Taylor D, Hiratsuka K, Malik N, et al. Specific detection and confirmation of Campylobacter jejuni by DNA hybridization and PCR. Appl Environ Microbiol 1997; 63: 4558-4563.
Venkateswaran K, Kamijoh Y, Ohashi E, Nakanishi H. A simple filtration technique to detect enterohemorrhagic Escherichia coli O157:H7 and its toxins in beef by multiplex PCR. Appl Environ Microbiol 1997; 63: 4127-4131.
Lehmacher A, Meier H, Aleksic S, Bockemühl J. Detection of hemolysin variants of shiga toxin-producing Escherichia coli by PCR and culture on vancomycin-cefixime-cefsulodin blood agar. Appl Environ Microbiol 1998; 64: 2449-2453.
Oberst R, Hays M, Bohra L, Phebus R, Yamashiro C, Pasko-Kolva C, et al. PCR-based DNA amplification and presumptive detection of Escherichia coli O157:H7 with an internal fluorogenic probe and the 5' nuclease (TaqMan) assay. Appl Environ Microbiol 1998; 64: 3389-3396.
Li W, Drake M. Development of a quantitative competitive PCR assay for detection and quantification of Escherichia coli O157:H7 cells. Appl Environ Microbiol 2001; 67: 3291-3294.
McIngvale S, Elhanafi D, Drake M. Optimization of reverse transcriptase PCR to detect viable Shiga-toxin-producing Escherichia coli. Appl Environ Microbiol 2002; 68: 799-806.
Cocolin L, Rantsiou K, Iacumin L, Cantoni C, Comi G. Direct identification in food samples of Listeria spp. and Listeria monocytogenes by molecular methods. Appl Environ Microbiol 2002; 68: 6273-6282.
Nogva H, Rudi K, Naterstad K, Holck A, Lillehaug D. Application of 5'-nuclease PCR for quantitative detection of Listeria monocytogenes in pure cultures, water, skim milk, and unpasteurized whole milk. Appl Environ Microbiol 2000; 66: 4266-4271.
Klein P, Juneja V. Sensitive detection of viable Listeria monocytogenes by reverse transcription-PCR. Appl Environ Microbiol 1997; 63: 4441-4448.
Cohen H, Mechanda S, Lin W. PCR amplification of the fimA gene sequence of Salmonella typhimurium, a specific method for detection of Salmonella spp. Appl Environ Microbiol 1996; 62: 4303-4308.
Villalobo E, Torres A. PCR for detection of Shigella spp. in mayonnaise. Appl Environ Microbiol 1998; 64: 1242-1245.
Omoe K, Ishikawa M, Shimoda Y, Hu D, Ueda S, Shinagawa K. Detection of seg, seh, and sei genes in Staphylococcus aureus isolates and determination of the enterotoxin productivities of S. aureus isolates harboring seg, seh, or sei genes. J Clin Microbiol 2002; 40: 857-862.
Sharma N, Rees C, Dodd C. Development of a single-reaction multiplex PCR toxin typing assay for Staphylococcus aureus strains. Appl Environ Microbiol 2000; 66: 1347-1353.
Monday S, Bohach G. Use of multiplex PCR to detect classical and newly described pyrogenic toxin genes in Staphylococcal isolates. J Clin Microbiol 1999; 37: 3411-3414.
Becker K, Roth R, Peters G. Rapid and specific detection of toxigenic Staphylococcus aureus: Use of two multiplex PCR enzyme immunoassays for amplification and hybridization of staphylococcal enterotoxin genes, exfoliative toxin genes, and toxic shock syndrome toxin 1 gene. J Clin Microbiol 1998; 36: 2548-2553.
Lyon W. TaqMan PCR for detection of Vibrio cholerae O1, O139, Non-O1, and Non-O139 in pure cultures, raw oysters, and synthetic seawater. Appl Environ Microbiol 2001; 67: 4685-4693.
Jourdan A, Johnson S, Wesley I. Development of a fluorogenic 5' nuclease PCR assay for detection of the ail gene of pathogenic Yersinia enterocolitica. Appl Environ Microbiol 2000; 66: 3750-3755.