2011, Number 3
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Ann Hepatol 2011; 10 (3)
Novel cytochrome P450-2D6 promoter sequence variations in hepatitis C positive and negative subjects
Ho MT, Kelly EJ, Bodor M, Bui T, Kowdley KV, Ho RJY
Language: English
References: 13
Page: 327-332
PDF size: 55.09 Kb.
ABSTRACT
Introduction. CYP2D6 is a liver enzyme that metabolizes more that 25% of drugs and thus may play a pivotal
role in drug-drug interactions. The promoter sequences of cytochrome P450 2D6 (CYP2D6) gene could impact
metabolic activity.
Methods. We analyzed genetic variations in the promoter sequence of CYP2D6
gene for 71 hepatitis C negative and 15 hepatitis C positive subjects.
Results. We found two novel genetic
variants -1822A→G; -1740C→T, only in two patients with hepatitis C. Also, two linked new promoter sequence
variations at –2060 G→A and –2053 T→G nucleotide positions that present in both hepatitis C negative
and positive subjects are identified. The -2060 and -2053 variations are confirmed to be in linkage
disequilibrium. The individuals with -2060A/A, and -2053G/G variation appeared to be associated with significantly
lower levels of liver CYP2D6 mRNA. Analysis of CYP2D6 enzymatic activity in *1/*1 (wild type) subjects
revealed that hepatitis C positive subjects expressed about 2.6-fold lower activity (24.0 ± 1.5
vs. 62.6
± 3.7 pmol/min/mg; p = 0.0061) relative to hepatitis C negative.
Conclusion. These data suggest that promoter
variations -1822A→G and -1740C→T are present only in hepatitis C infected subjects. Hepatitis C positive
individuals were associated with a lower liver CYP2D6 enzyme activity.
REFERENCES
Evans WE, Relling MV. Pharmacogenomics: translating functional genomics into rational therapeutics. Science 1999; 286(5439): 487-91.
Kimura S, Umeno M, Skoda RC, Meyer UA, Gonzalez FJ. The human debrisoquine 4-hydroxylase (CYP2D) locus: sequence and identification of the polymorphic CYP2D6 gene, a related gene, and a pseudogene. Am J Hum Genet 1989; 45(6): 889-904.
Zanger UM, Fischer J, Raimundo S, Stüven T, Evert BO, Schwab M, Eichelbaum M. Comprehensive analysis of the genetic factors determining expression and function of hepatic CYP2D6. Pharmacogenetics 2001; 11(7): 573-85.
Bock KW, et al. The influence of environmental and genetic factors on CYP2D6, CYP1A2 and UDP-glucuronosyltransferases in man using sparteine, caffeine, and paracetamol as probes. Pharmacogenetics 1994; 4(4): 209-18.
Griese EU, et al. Assessment of the predictive power of genotypes for the invivo catalytic function of CYP2D6 in a German population. Pharmacogenetics 1998; 8(1): 15-26.
Sachse C, et al. Cytochrome P450 2D6 variants in a Caucasian population: allele frequencies and phenotypic consequences. Am J Hum Genet 1997; 60(2): 284-95.
McConnachie L, Bodor M, Kowdley K, Levy A, Tung B, Thummel K, et al. Human liver cytochrome P450 2D6 genotype, full-length messenger ribonucleic acid, and activity assessed with a novel cytochrome P450 2D6 substrate. Clin Pharmacol Ther 2004; 75(4): 282-97.
McConnachie LA, Bodor M, Phillips B, Kelly EJ, Shen DD, Ho RJ. An RT-PCR-based Strategy to Estimate Full-Length CYP2D6 mRNA Copy Number. Genetic Testing 2004; 8(3): 313-8.
Day-Gaunt TR, Rodríguez S, Day IN. Cubic exact solutions for the estimation of pairwise haplotype frequencies: implications for linkage disequilibrium analyses and a web tool ‘Cubex’. BMC Bioinformat 2007; 8: 428.
Gaedigk A, et al. CYP2D6 poor metabolizer status can be ruled out by a single genotyping assay for the -1584G promoter polymorphism. Clin Chem 2003; 49(6 Pt.): P1008-P1011.
Marez D, Legrand M, Sabbagh N, Lo-Guidice JM, Spire C, Lafitte JJ, Meyer UA, et al. Polymorphism of the cytochrome P450 CYP2D6 gene in a European population: characterization of 48 mutations and 53 alleles, their frequencies and evolution. Pharmacogenetics 1997; 7(3): 193-202.
Raimundo S, Toscano C, Klein K, Fischer J, Griese EU, Eichelbaum M, et al. A novel intronic mutation, 2988G>A, with high predictivity for impaired function of cytochrome P450 2D6 in white subjects. Clin Pharmacol Ther 2004; 76(2): 128-38.
Gaedigk A, Ryder DL, Bradford LD, Leeder JS. CYP2D6 poor metabolizer status can be ruled out by a single genotyping assay for the -1584G promoter polymorphism. Clin Chem 2003; 49(6 Pt.1): 1008-11.