2021, Number 2
<< Back Next >>
Alerg Asma Inmunol Pediatr 2021; 30 (2)
Relevance of an adequate DNA extraction protocol for molecular studies
Cruz-Enríquez JA, Espinosa-Padilla SE, Medina-Torres EA
Language: Spanish
References: 11
Page: 50-53
PDF size: 128.76 Kb.
ABSTRACT
DNA (deoxyribonucleic acid) extraction has become an important procedure for the molecular study of genetic diseases. For this reason, it is important for both the research physician and the clinician to know the importance of having an adequate DNA extraction protocol and the relevance it has on the concentration, purity and integrity of genomic DNA. In this article we reviewed the factors that influence each step of the DNA extraction protocol to give a suboptimal product that will not allow its subsequent use in any molecular study required, since the protocol is not only confined to the process within the laboratory, recommendations will be given ranging from proper sample collection, the choice of the best anticoagulants to maintain proper preservation conditions of the sample, as well as how long and in what environmental conditions samples can be stored without affecting the outcome of the process. Errors that may occur within the laboratory itself (clinical or research) during the extraction protocol that may affect the purity, quantity, integrity and even the loss of genetic material will be studied, in this article the general steps of the protocol will be described DNA extraction independent of the commercial kit used.
REFERENCES
Tan SC, Yiap BC. DNA, RNA, and protein extraction: the past and the present. J Biomed Biotechnol. 2009; 2009: 574398. doi: 10.1155/2009/574398.
Holland NT, Pfleger L, Berger E, Ho A, Bastaki M. Molecular epidemiology biomarkers--sample collection and processing considerations. Toxicol Appl Pharmacol. 2005; 206 (2): 261-268. doi: 10.1016/j.taap.2004.10.024.
Vaught JB, Henderson MK. Biological sample collection, processing, storage and information management. IARC Sci Publ. 2011; (163): 23-42.
Sotoudeh Anvari M, Gharib A, Abolhasani M, Azari-Yam A, Hossieni Gharalari F, Safavi M et al. Pre-analytical practices in the molecular diagnostic tests, a concise review. Iran J Pathol. 2021; 16 (1): 1-19. doi: 10.30699/ijp.2020.124315.2357.
Shander A, Javidroozi M, Lobel G. Patient blood management in the Intensive Care Unit. Transfus Med Rev. 2017; 31 (4): 264-271. doi: 10.1016/j.tmrv.2017.07.007.
Holland NT, Smith MT, Eskenazi B, Bastaki M. Biological sample collection and processing for molecular epidemiological studies. Mutat Res. 2003; 543 (3): 217-234. doi: 10.1016/s1383-5742(02)00090-x.
Huang LH, Lin PH, Tsai KW, Wang LJ, Huang YH, Kuo HC et al. The effects of storage temperature and duration of blood samples on DNA and RNA qualities. PLoS One. 2017; 12 (9): e0184692. doi: 10.1371/journal.pone.0184692.
Rainen L, Arbique JC, Asthana D, Earley MC, Geiszler RL, Krieg-Schneider F et al. MM13-A-Collection, transport, preparation, and storage of specimens for molecular methods: approved guideline. Pennsylvania, USA: CLSI; 2005. pp. 1-51.
Steinberg K, Beck J, Nickerson D, Garcia-Closas M, Gallagher M, Caggana M et al. DNA banking for epidemiologic studies: a review of current practices. Epidemiology. 2002; 13 (3): 246-254.
QIAGEN. Gentra Puregene Handbook. 3rd edition. 2011. Available in: https://www.qiagen.com/us/
Mullegama SV, Alberti MO, Au C, Li Y, Toy T, Tomasian V et al. Nucleic acid extraction from human biological samples. Methods Mol Biol. 2019; 1897: 359-383. doi: 10.1007/978-1-4939-8935-5_30.