2018, Number 2
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Rev Cub Gen 2018; 12 (2)
New mutation in GPR98 in Holguin family with Usher Syndrome type II
Santana HEE, Lantigua CPA, Millán SJM
Language: Spanish
References: 19
Page: 1-14
PDF size: 212.07 Kb.
ABSTRACT
Introduction: Usher type II syndrome, a genetic disease characterized by moderate to severe
congenital bilateral sensorineural hearing loss, onset of postpubertal pigmentary retinitis and
normal vestibular function. With autosomal recessive transmission pattern, it presents with
great clinical and genetic heterogeneity. Type II is the most common in all regions.
Objectives: to characterize molecularly the patients of a family with clinical diagnosis of
syndrome Usher type II, in the province of Holguín.
Methods: We performed a molecular study using a panel of new generation sequencing genes,
which includes all the coding regions of the 11 genes responsible for Usher's syndrome
described to date. The presence of mutations detected by this technology was confirmed by
direct sequencing by the Sanger method.
Results: the presence of a mutation in homozygosis in the GPR98 gene (NM_032119.3):
c.15446_15447delCT (exon 74) not previously described was detected after the analysis. In
addition, the c.3242 G> A mutation was found in exon 28 of the CDH23 gene (exon 28) in
heterozygosity. According to the Polyphen program this change is probably pathological so it
could be modifying the phenotype caused by the mutations in GPR98.
Conclusions: new mutation is known in GPR98 not previously described and another in
CDH23 showing genetic variability. This research will help design similar studies in order to
molecularly characterize this disease in Cuban families, which will benefit prevention and
facilitate proper genetic counseling.
REFERENCES
Millán JM, Aller E, Jaijo T, Blanco-Kelly F, Gimenez-Pardo A, Ayuso C: An update on the genetics of usher syndrome. J Ophthalmol [Internet]. 2011:417217. Acceso: 02/05/2017. Disponible en: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3017948/
Yan D, Liu XZ. Genetics and pathological mechanisms of Usher syndrome. J Hum Genet. 2010;55(6):327-35. Acceso: 09/01/2017 Disponible en: https://www.ncbi.nlm.nih.gov/pubmed/20379205
Moteki H, Yoshimura H, Azaiez H, Booth KT, Shearer AE, Sloan CM, et al. USH2 caused by GPR98 mutation diagnosed by massively parallel sequencing in advance of the occurrence of visual symptoms. Ann Otol Rhinol Laryngol. 2015;124(Suppl 1):123S-8S. Acceso: 12/03/2017. Disponible en: https://www.ncbi.nlm.nih.gov/pubmed/25743181
Kahrizi K, Bazazzadegan N, Jamali L, Nikzat N, Kashef A, Najmabadi H. A novel mutation of the USH2C (GPR98) gene in an Iranian family with Usher syndrome type II. J Genet. 2014;93(3):837-41. Acceso: 02/05/2017. Disponible en: https://www.ncbi.nlm.nih.gov/pubmed/25572244
Aparisi MJ, Aller E, Fuster-García C, García-García G, Rodrigo R, Vázquez-Manrique RP, et al. Targeted next generation sequencing for molecular diagnosis of Usher syndrome. Orphanet J Rare Dis. 2014;9:168. Acceso: 06/02/2017. Disponible en: https://www.ncbi.nlm.nih.gov/pubmed/25404053
García-García G, Besnard T, Baux D, Vaché C, Aller E, Malcolm S, et al. The contribution of GPR98 and DFNB31 genes to a Spanish Usher syndrome type 2 cohort. Mol Vis. 2013;19:367-73. Acceso: 15/03/2017. Disponible en: https://www.ncbi.nlm.nih.gov/pubmed/23441107
García-García G, Aller E, Jaijo T, Aparisi MJ, Larrieu L, Faugère V, et al. Novel deletions involving the USH2A gene in patients with Usher syndrome and retinitis pigmentosa. Mol Vis. 2014;20:1398-410. Acceso: 15/03/2017. Disponible en: https://www.ncbi.nlm.nih.gov/pubmed/25352746
Vaché C, Besnard T, le Berre P, García-García G, Baux D, Larrieu L, et al. Usher syndrome type 2 caused by activation of an USH2A pseudoexon: implications for diagnosis and therapy. Hum Mutat. 2012;33(1):104-8. Acceso: 02/05/2017. Disponible en: https://www.ncbi.nlm.nih.gov/pubmed/22009552
Licastro D, Mutarelli M, Peluso I, Neveling K, Wieskamp N, Rispoli R, et al. Molecular diagnosis of Usher syndrome: application of two different next generation sequencingbased procedures. PLoS One. 2012;7(8):e43799. Acceso: 06/02/2017. Disponible en: https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0043799
Krawitz PM, Schiska D, Krüger U, Appelt S, Heinrich V, Parkhomchuk D, et al. Screening for single nucleotide variants, small indels and exon deletions with a next-generation sequencing based gene panel approach for Usher syndrome. Mol Genet Genomic Med. 2014;2(5):393-401. Acceso: 09/01/2017. Disponible en: https://www.ncbi.nlm.nih.gov/pubmed/25333064
Pedersen AG, Nielsen H. Neural network prediction of translation initiation sites in eukaryotes: perspectives for EST and genome analysis. ISMB. 1997;5:226-33. Acceso: 06/02/2017. Disponible en: https://www.ncbi.nlm.nih.gov/pubmed/9322041
Liu H, Han H, Li J, Wong L. DNAFS Miner: a web-based software toolbox to recognize two types of functional sites in DNA sequences. Bioinformatics. 2005;21(5):671-3. Acceso: 02/05/2017. Disponible en: https://www.ncbi.nlm.nih.gov/pubmed/15284102
Desmet FO, Hamroun D, Lalande M, Collod-Béroud G, Claustres M, Béroud C. Human Splicing Finder: an online bioinformatics tool to predict splicing signals. Nucleic Acids Res. 2009;37(9):e67. Acceso: 15/03/2017. Disponible en: https://www.ncbi.nlm.nih.gov/pubmed/19339519
Hilgert N, Kahrizi K, Dieltjens N, Bazazzadegan N, Najmabadi H, Smith RJ, et al. A large deletion in GPR98 causes type IIC Usher syndrome in male and female members of an Iranian family. J Med Genet. 2009;46(4):272-6. Acceso: 02/05/2017. Disponible en: https://www.ncbi.nlm.nih.gov/pubmed/19357116
Moteki H, Yoshimura H, Azaiez H, Booth KT, Shearer AE, Sloan ChM, et al. USH2 caused by GPR98 mutation diagnosed by massively parallel sequencing in advance of the occurrence of visual symptoms. Ann Otol Rhinol Laryngol. 2015;124(10):123S-8S. Acceso: 15/03/2017. Disponible en: http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4441826/
Sadeghi AM, Cohn ES, Kimberling WJ, Halvarsson G, Möller C. Expressivity of hearing loss in cases with Usher syndrome type IIA. Int J Audiol. 2013;52(12):832-7. Acceso: 06/02/2017. Disponible en: https://www.ncbi.nlm.nih.gov/pubmed/24160897
Reddy R, Fahiminiya S, El Zir E, Mansour A, Megarbane A, Majewski J, et al. Molecular genetics of the Usher syndrome in Lebanon: identification of 11 novel protein truncating mutations by whole exome sequencing. PLoS One. 2014;9(9):e107326. Acceso: 02/05/2017. Disponible en: https://www.ncbi.nlm.nih.gov/pubmed/25211151
Liquori A, Vaché C, Baux D, Blanchet C, Hamel C, Malcolm S, et al. Whole USH2A gene sequencing identifies several new deep intronic mutations. Hum Mutat. 2016;37(2):184-93. Acceso: 18/04/2017. Disponible en: https://www.ncbi.nlm.nih.gov/pubmed/26629787
Ebermann I, Wiesen MH, Zrenner E, Lopez I, Pigeon R, Kohl S, et al. GPR98 mutations cause Usher syndrome type 2 in males. J Med Genet. 2009;46(4):277-80. Acceso: 02/05/2017. Disponible en: https://www.ncbi.nlm.nih.gov/pubmed/19357117